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CASP Zoom Meetings

Welcome to the homepage for CASP Zoom meetings. Staring in January 2023 we plan to have monthly (2nd Wednesday in the month) zoom meetings, see Calendar, to discuss CASP related issues. The format of the meeting is still being discusses, but the focus will be to stimulate discussions. This might contain short presentations of current results. If you have an interest to participate please join the mailing list or contact me directly.

We are also trying to collact CASP related resources. Please use this submission form to add papers, videos, interesting code, or meetings. All submissions are manually checked so please allow some time for them to occur on this page.

Goals

Some goals of these meetings are to promote development, increase collaboration among CASP participants, and include more people in the community.

List of speakers/meetings

See Calendar for details
  1. 2023
    1. Jan 11: Discussion meeting
    2. Feb 8: Niccolò Zanichelli Video
    3. Mar 8: Björn Wallner and Peter Fredolino Video
    5. Apr 12: Tommi Jaakola
    6. May 10: Nazim Bouatta Video
    7. Jun 14: Minkyung Baek Video
    8. Jul 12 (14:00): Martin Steinegger
    9. Sep 13:(16:00): Mafalda Dias and Jonathan Frazer "Increasing diagnostic yield of patient sequencing with proteome-scale probabilistic modeling"Video
    10. Oct 11: CANCELED DUE TO SICKNESS
    11. Nov 8: Kevin Yang, Microsoft "Protein generation with evolutionary diffusion" Video
    12. Dec 13: Discussion Session Video
  2. 2024
    1. Jan 10:Philip M. Kim, "Machine learning methods for de novo protein and peptide design" Video
    2. Feb 14: Frank DiMaio, "Generalized Biomolecular Modeling and Design with RoseTTAFold All-Atom" Video
    3. Mar 13: Sergey Ovchinnikov and Patrick Bryant "Modifying inputs to AF by examining the output" Video
    4. Apr 10:Janani Durairaj: "Protein-ligand complex prediction: Are we there yet" Video
    5. May 8: Kresten Lindorff-Larsen "Conformational ensembles of the huiman intrinsically disordered proteome." Video
    6. Jun 12: Cecilia Clementi. "Machine learning for potentials"Video
    7. Jul 10: VACATION IN SWEDEN
    8. Aug 14: VACATION IN EUROPE
    9. Sep 10: Debbie Marks
    10. Oct 8:
    11. Nov 12:Michael Feig
    12. Dec 11 Post CASP Discussion

Agenda of meetings (preliminary)

Each meeting is headed by a chair (rotating) and one person is presenting a relavant topic shortly. Selection is done by a small group of active participants in these meeting and at CASP. For details for each meeting see the calendar.
  1. Opening (by the chair)
  2. Short presentation (40 min ) of a relevant topic.
  3. General discussion (20 min)

Resources

Steering board (preliminary)

Plans decided at meeting Jan 11 2023

Goals are that this will lead to general discussion, i.e., which would be the next breakthrough methodology?

Potential topics